Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02342.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4197
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32


Found at i:2912 original size:30 final size:30

Alignment explanation


    Indices: 2876--2936  Score: 95
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       2866 GTTGTGGGCG

                             *            
       2876 AGTAATGTTACCGCTCATAAATTAAATCAT
          1 AGTAATGTTACCGCTCACAAATTAAATCAT

                       *        *         
       2906 AGTAATGTTACTGCTCACAACTTAAATCAT
          1 AGTAATGTTACCGCTCACAAATTAAATCAT

             
       2936 A
          1 A

       2937 CTGCTCTCAA


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33


Consensus pattern (30 bp):   
AGTAATGTTACCGCTCACAAATTAAATCAT

Found at i:2940 original size:21 final size:21

Alignment explanation


    Indices: 2914--2957  Score: 70
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       2904 ATAGTAATGT

                        *        
       2914 TACTGCTCACAACTTAAATCA
          1 TACTGCTCACAAATTAAATCA

                    *            
       2935 TACTGCTCTCAAATTAAATCA
          1 TACTGCTCACAAATTAAATCA

              
       2956 TA
          1 TA

       2958 ACGTTGACAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.39, C:0.25, G:0.05, T:0.32


Consensus pattern (21 bp):   
TACTGCTCACAAATTAAATCA
Done.