Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02344.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 518

Length: 864
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34


Found at i:37 original size:26 final size:26

Alignment explanation


    Indices: 1--92  Score: 157
    Period size: 26  Copynumber: 3.5  Consensus size: 26

                 *         *          
          1 ATGTTTCATGATAATAGGTTAGGTAA
          1 ATGTTCCATGATAATGGGTTAGGTAA

                                      
         27 ATGTTCCATGATAATGGGTTAGGTAA
          1 ATGTTCCATGATAATGGGTTAGGTAA

                                      
         53 ATGTTCCATGATAATGGGTTAGGTAA
          1 ATGTTCCATGATAATGGGTTAGGTAA

                 *        
         79 ATGTTTCATGATAA
          1 ATGTTCCATGATAA

         93 GAATTTCATG


Statistics
Matches: 63,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  26   63  1.00

ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37


Consensus pattern (26 bp):   
ATGTTCCATGATAATGGGTTAGGTAA
Done.