Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02348.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2475
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32


Found at i:229 original size:26 final size:26

Alignment explanation


    Indices: 194--355  Score: 270
    Period size: 26  Copynumber: 6.2  Consensus size: 26

        184 TGATACAAAT

                                   * *
        194 TGATAATAGGTTAGGTAAATGTTCCT
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                      
        220 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
        246 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                      
        272 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
        298 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *            *     
        324 TGATAATGGGTTAGGTAAATATTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                  
        350 TGATAA
          1 TGATAA

        356 GAATTTCATG


Statistics
Matches: 130,  Mismatches: 6, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26  130  1.00

ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTTCA

Found at i:1467 original size:137 final size:137

Alignment explanation


    Indices: 1221--1507  Score: 547
    Period size: 137  Copynumber: 2.1  Consensus size: 137

       1211 GAGTAGTCTC

                                                                             
       1221 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
       1286 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

               *   
       1351 ACTGTTA
        131 ACTATTA

                                                                             
       1358 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
       1423 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1488 ACTATTA
        131 ACTATTA

              **         
       1495 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1508 AGGCCCAATA


Statistics
Matches: 147,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 137  147  1.00

ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTATTA
Done.