Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01987.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4593
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32


Found at i:4019 original size:15 final size:15

Alignment explanation


    Indices: 3999--4029  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3989 TTGAGTTAAT

                           
       3999 TATTCAATTTAGTGC
          1 TATTCAATTTAGTGC

                           
       4014 TATTCAATTTAGTGC
          1 TATTCAATTTAGTGC

             
       4029 T
          1 T

       4030 TAAAATGATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48


Consensus pattern (15 bp):   
TATTCAATTTAGTGC
Done.