Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02356.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3176
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33


Found at i:46 original size:6 final size:7

Alignment explanation


    Indices: 20--45  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

         10 TATGAAAGCA

                   
         20 AAAAAAT
          1 AAAAAAT

                   
         27 AAAAAAT
          1 AAAAAAT

                   
         34 AAAAAAT
          1 AAAAAAT

                 
         41 AAAAA
          1 AAAAA

         46 TGAGAGGTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12


Consensus pattern (7 bp):   
AAAAAAT
Done.