Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02358.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:989 original size:14 final size:14

Alignment explanation


    Indices: 970--996  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        960 TAATTCAAAT

                          
        970 CAATCAACGTACGG
          1 CAATCAACGTACGG

                         
        984 CAATCAACGTACG
          1 CAATCAACGTACG

        997 ATTTTAGTGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.37, C:0.30, G:0.19, T:0.15


Consensus pattern (14 bp):   
CAATCAACGTACGG
Done.