Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00235.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 906
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:873 original size:2 final size:2

Alignment explanation


    Indices: 862--891  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

        852 CTTTTTGTTG

                                                          
        862 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        892 CATAATGGAG


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   26  0.96

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.