Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02379.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 677

Length: 1129
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.33


Found at i:308 original size:16 final size:17

Alignment explanation


    Indices: 287--320  Score: 61
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        277 GTATTGATAT

                             
        287 TTGAGTTGAAT-GAGAA
          1 TTGAGTTGAATGGAGAA

                             
        303 TTGAGTTGAATGGAGAA
          1 TTGAGTTGAATGGAGAA

             
        320 T
          1 T

        321 GTGTGTGTAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.65
  17    6  0.35

ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32


Consensus pattern (17 bp):   
TTGAGTTGAATGGAGAA
Done.