Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02390.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2373
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:742 original size:15 final size:15

Alignment explanation


    Indices: 722--754  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

        712 AAATGCCATA

                       *   
        722 CTGTCACCGCCGCTG
          1 CTGTCACCGCCACTG

                           
        737 CTGTCACCGCCACTG
          1 CTGTCACCGCCACTG

               
        752 CTG
          1 CTG

        755 CCAGTGCCGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.09, C:0.45, G:0.24, T:0.21


Consensus pattern (15 bp):   
CTGTCACCGCCACTG
Done.