Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02401.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2903
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37


Found at i:404 original size:31 final size:31

Alignment explanation


    Indices: 366--430  Score: 121
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        356 CCCCTCTCTC

                                           
        366 TCTCTCTCTTCACATTAGTTCACCCGTGGTT
          1 TCTCTCTCTTCACATTAGTTCACCCGTGGTT

                                   *       
        397 TCTCTCTCTTCACATTAGTTCACTCGTGGTT
          1 TCTCTCTCTTCACATTAGTTCACCCGTGGTT

               
        428 TCT
          1 TCT

        431 ATGTGATGAC


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.12, C:0.31, G:0.12, T:0.45


Consensus pattern (31 bp):   
TCTCTCTCTTCACATTAGTTCACCCGTGGTT
Done.