Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02408.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 527

Length: 879
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33


Found at i:543 original size:18 final size:18

Alignment explanation


    Indices: 506--566  Score: 59
    Period size: 18  Copynumber: 3.4  Consensus size: 18

        496 AGCCTAAGCC

                  *     *  *  
        506 CCACCATGGCGGCCATCA
          1 CCACCACGGCGGGCACCA

              *  *            
        524 CCGCCGCGGCGGGCACCA
          1 CCACCACGGCGGGCACCA

                  *           
        542 CCACCATGGCGGGCACCA
          1 CCACCACGGCGGGCACCA

              *    
        560 CCCCCAC
          1 CCACCAC

        567 CACCATGGCC


Statistics
Matches: 33,  Mismatches: 10, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  18   33  1.00

ACGTcount: A:0.18, C:0.51, G:0.26, T:0.05


Consensus pattern (18 bp):   
CCACCACGGCGGGCACCA
Done.