Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01997.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 526

Length: 877
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31


Found at i:799 original size:53 final size:53

Alignment explanation


    Indices: 719--824  Score: 212
    Period size: 53  Copynumber: 2.0  Consensus size: 53

        709 TCAGATCCTG

                                                                 
        719 AGGGTGCTTAGTTAGGATCAGTTCCAGTGCTGTTTCCATAAATAAACAAACTT
          1 AGGGTGCTTAGTTAGGATCAGTTCCAGTGCTGTTTCCATAAATAAACAAACTT

                                                                 
        772 AGGGTGCTTAGTTAGGATCAGTTCCAGTGCTGTTTCCATAAATAAACAAACTT
          1 AGGGTGCTTAGTTAGGATCAGTTCCAGTGCTGTTTCCATAAATAAACAAACTT

        825 TGTATGGACA


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  53   53  1.00

ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Consensus pattern (53 bp):   
AGGGTGCTTAGTTAGGATCAGTTCCAGTGCTGTTTCCATAAATAAACAAACTT
Done.