Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02432.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1825
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31


Found at i:1665 original size:26 final size:26

Alignment explanation


    Indices: 1633--1682  Score: 100
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       1623 ATTTTTTTCA

                                      
       1633 ATATTGTGAAAGAAGTATATTTATGT
          1 ATATTGTGAAAGAAGTATATTTATGT

                                    
       1659 ATATTGTGAAAGAAGTATATTTAT
          1 ATATTGTGAAAGAAGTATATTTAT

       1683 ATGCTGAAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42


Consensus pattern (26 bp):   
ATATTGTGAAAGAAGTATATTTATGT
Done.