Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02435.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3377
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35


Found at i:1056 original size:15 final size:15

Alignment explanation


    Indices: 1032--1061  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1022 GGGTTAACTT

                           
       1032 CCTTTCTATAAACCA
          1 CCTTTCTATAAACCA

                 *         
       1047 CCTTTGTATAAACCA
          1 CCTTTCTATAAACCA

       1062 ATCACAATGG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.33, C:0.30, G:0.03, T:0.33


Consensus pattern (15 bp):   
CCTTTCTATAAACCA
Done.