Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02440.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2903
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:2450 original size:18 final size:17

Alignment explanation


    Indices: 2421--2461  Score: 64
    Period size: 18  Copynumber: 2.4  Consensus size: 17

       2411 TGCATGCTAG

                 *           
       2421 TTTTAGTTTTTTATTTT
          1 TTTTATTTTTTTATTTT

                              
       2438 TTATTATTTTTTTATTTT
          1 TT-TTATTTTTTTATTTT

                  
       2456 TTTTAT
          1 TTTTAT

       2462 GGCTATGAAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  17    6  0.27
  18   16  0.73

ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83


Consensus pattern (17 bp):   
TTTTATTTTTTTATTTT
Done.