Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01999.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1400
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27


Found at i:342 original size:3 final size:3

Alignment explanation


    Indices: 334--389  Score: 112
    Period size: 3  Copynumber: 18.7  Consensus size: 3

        324 CAGTAATAGT

                                                                           
        334 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

                      
        382 GAA GAA GA
          1 GAA GAA GA

        390 CTGTTTTATC


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   53  1.00

ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00


Consensus pattern (3 bp):   
GAA

Done.