Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02001.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 284

Length: 474
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32


Found at i:313 original size:38 final size:38

Alignment explanation


    Indices: 262--342  Score: 153
    Period size: 38  Copynumber: 2.1  Consensus size: 38

        252 CCCCTTTCAT

                                               *  
        262 TCATACCCTATTGTTCTTACACCTTTCATCATCCTTAC
          1 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC

                                                  
        300 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
          1 TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC

                 
        338 TCATA
          1 TCATA

        343 AACAATCATA


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  38   42  1.00

ACGTcount: A:0.22, C:0.35, G:0.02, T:0.41


Consensus pattern (38 bp):   
TCATACCCTATTGTTCTTACACCTTTCATCATCCTCAC
Done.