Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02451.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4160
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32


Found at i:3986 original size:17 final size:17

Alignment explanation


    Indices: 3964--3998  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       3954 ATACAATCCG

                             
       3964 AGTCATTATAAAGTCTC
          1 AGTCATTATAAAGTCTC

                             
       3981 AGTCATTATAAAGTCTC
          1 AGTCATTATAAAGTCTC

             
       3998 A
          1 A

       3999 TCACACAGCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34


Consensus pattern (17 bp):   
AGTCATTATAAAGTCTC
Done.