Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02455.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2964
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32


Found at i:76 original size:3 final size:3

Alignment explanation


    Indices: 68--141  Score: 121
    Period size: 3  Copynumber: 24.7  Consensus size: 3

         58 GCAGATAATG

                              *                  *                         
         68 GAA GAA GAA GAA GAC GAA GAA GAA GAA GCA GAA GAA GAA GAA GAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

                                     *        
        116 GAA GAA GAA GAA GAA GAA GCA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GA

        142 CTGGTGTTTT


Statistics
Matches: 65,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   3   65  1.00

ACGTcount: A:0.62, C:0.04, G:0.34, T:0.00


Consensus pattern (3 bp):   
GAA

Done.