Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02460.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2378
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25


Found at i:993 original size:42 final size:42

Alignment explanation


    Indices: 945--1114  Score: 252
    Period size: 42  Copynumber: 4.0  Consensus size: 42

        935 ACCAAATGAG

                                               *      
        945 GAATTGGTAGCTGATGAGACCAATGATGCTGCTGTATCTGAA
          1 GAATTGGTAGCTGATGAGACCAATGATGCTGCTGTTTCTGAA

                    *              *       *          
        987 GAATTGGTGGCTGATGAGACCAACGATGCTGTTGTTTCTGAA
          1 GAATTGGTAGCTGATGAGACCAATGATGCTGCTGTTTCTGAA

                    *                              *  
       1029 GAATTGGTGGCTGATGAGACCAATGATGCTGCTGTTTCTCAA
          1 GAATTGGTAGCTGATGAGACCAATGATGCTGCTGTTTCTGAA

                   *                               *   
       1071 GAATTGGCAGCTGATG-GAACCAATGATGCTGCTGTTTCCGAA
          1 GAATTGGTAGCTGATGAG-ACCAATGATGCTGCTGTTTCTGAA

              
       1113 GA
          1 GA

       1115 TGCACCTGAA


Statistics
Matches: 116,  Mismatches: 11, Indels: 2
        0.90            0.09        0.02

Matches are distributed among these distances:
  41    1  0.01
  42  115  0.99

ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29


Consensus pattern (42 bp):   
GAATTGGTAGCTGATGAGACCAATGATGCTGCTGTTTCTGAA

Done.