Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02468.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4321
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36


Found at i:1388 original size:90 final size:90

Alignment explanation


    Indices: 1235--1415  Score: 362
    Period size: 90  Copynumber: 2.0  Consensus size: 90

       1225 TACCCTTCTG

                                                                             
       1235 AACAAAAGTCTTCTTTTGTAATTCATGGACCTGATGGAATGTCATTATCTCTGCACATAATATTA
          1 AACAAAAGTCTTCTTTTGTAATTCATGGACCTGATGGAATGTCATTATCTCTGCACATAATATTA

                                     
       1300 GCTAGTTGCTTGGATTATGTTCTTC
         66 GCTAGTTGCTTGGATTATGTTCTTC

                                                                             
       1325 AACAAAAGTCTTCTTTTGTAATTCATGGACCTGATGGAATGTCATTATCTCTGCACATAATATTA
          1 AACAAAAGTCTTCTTTTGTAATTCATGGACCTGATGGAATGTCATTATCTCTGCACATAATATTA

                                     
       1390 GCTAGTTGCTTGGATTATGTTCTTC
         66 GCTAGTTGCTTGGATTATGTTCTTC

             
       1415 A
          1 A

       1416 GAGCTTTTGT


Statistics
Matches: 91,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  90   91  1.00

ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40


Consensus pattern (90 bp):   
AACAAAAGTCTTCTTTTGTAATTCATGGACCTGATGGAATGTCATTATCTCTGCACATAATATTA
GCTAGTTGCTTGGATTATGTTCTTC
Done.