Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02473.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 954

Length: 1590
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30


Found at i:1403 original size:17 final size:15

Alignment explanation


    Indices: 1355--1392  Score: 69
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       1345 AAGAGAACTC

                           
       1355 AAAAAA-GAAGAGGG
          1 AAAAAACGAAGAGGG

                           
       1369 AAAAAACGAAGAGGG
          1 AAAAAACGAAGAGGG

                     
       1384 AAAAAACGA
          1 AAAAAACGA

       1393 GGAGTTGGAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  14    6  0.26
  15   17  0.74

ACGTcount: A:0.66, C:0.05, G:0.29, T:0.00


Consensus pattern (15 bp):   
AAAAAACGAAGAGGG
Done.