Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02477.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3018
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35


Found at i:935 original size:47 final size:47

Alignment explanation


    Indices: 863--953  Score: 139
    Period size: 47  Copynumber: 1.9  Consensus size: 47

        853 GTATTACCAA

                   *            *                           
        863 GTCTATTTTTAGTAAATGCCGAAGAGCTTC-TCAAGTTTATTCATGTT
          1 GTCTATTATTAGTAAATGCCAAAGAGCTTCAT-AAGTTTATTCATGTT

                      *                                 
        910 GTCTATTATTGGTAAATGCCAAAGAGCTTCATAAGTTTATTCAT
          1 GTCTATTATTAGTAAATGCCAAAGAGCTTCATAAGTTTATTCAT

        954 TTTAGAAACC


Statistics
Matches: 40,  Mismatches: 3, Indels: 2
        0.89            0.07        0.04

Matches are distributed among these distances:
  47   39  0.98
  48    1  0.03

ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41


Consensus pattern (47 bp):   
GTCTATTATTAGTAAATGCCAAAGAGCTTCATAAGTTTATTCATGTT
Done.