Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02479.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2740
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37


Found at i:1926 original size:139 final size:138

Alignment explanation


    Indices: 1670--1939  Score: 310
    Period size: 139  Copynumber: 1.9  Consensus size: 138

       1660 AGATCTTTGT

                                             *    *          *    *       *  
       1670 CTTTCAAGTTGTTATCTGATTTAGGGTTGTAATTGGCCGAGCCGAGCTTGAACTTGGCTTGATAT
          1 CTTTCAAGTTGTTATCTGATTTAGGGTTGTAATAGGCCAAGCCGAGCTTCAACTGGGCTTGAGAT

               *                *    **           *                *     *   
       1735 AAAGTCAAATTATTCGAGCTGGATTTTATTAAGCTAAATTATTAGAGCTTAAAAAGTAATGTACA
         66 AAAATCAAATTATTCGAGCTCGATTCGATTAAGCTAAACTATTAGAGCTTAAAAAATAATGCACA

                    
       1800 CGCCTGAA
        131 CGCCTGAA

                  *                                    *                     
       1808 CTTTCATGTTGTTATCTGATTTAGGGTTGTAATCAGGCCAAGCTGAGC-TCAAGCTGGGCTTGAG
          1 CTTTCAAGTTGTTATCTGATTTAGGGTTGTAAT-AGGCCAAGCCGAGCTTCAA-CTGGGCTTGAG

                    * *  *  *                    **           *              
       1872 ATAAAATCGATTTTTTTGAGCTCGATTCGATTAAGCTCTACTATTCA-AGTTTAAAAAATAATGC
         64 ATAAAATCAAATTATTCGAGCTCGATTCGATTAAGCTAAACTATT-AGAGCTTAAAAAATAATGC

                
       1936 ACAC
        128 ACAC

       1940 ACTTAAAACG


Statistics
Matches: 108,  Mismatches: 21, Indels: 5
        0.81            0.16        0.04

Matches are distributed among these distances:
 138   35  0.32
 139   72  0.67
 140    1  0.01

ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Consensus pattern (138 bp):   
CTTTCAAGTTGTTATCTGATTTAGGGTTGTAATAGGCCAAGCCGAGCTTCAACTGGGCTTGAGAT
AAAATCAAATTATTCGAGCTCGATTCGATTAAGCTAAACTATTAGAGCTTAAAAAATAATGCACA
CGCCTGAA
Done.