Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g02482.F6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4473
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Found at i:1788 original size:154 final size:154
Alignment explanation
Indices: 1508--1819 Score: 606
Period size: 154 Copynumber: 2.0 Consensus size: 154
1498 GACTTTCTAA
1508 TTTTATCTGTGCATGTTCTTAGGAATGTTTCCACTTGTTTATCATACGGACTTGACTGTTTATAG
1 TTTTATCTGTGCATGTTCTTAGGAATGTTTCCACTTGTTTATCATACGGACTTGACTGTTTATAG
1573 TGATGATTTAGATCTAATTTTCTTATCAATCACATATTTCTCGTTTATTTAGATTTTAGATGGTC
66 TGATGATTTAGATCTAATTTTCTTATCAATCACATATTTCTCGTTTATTTAGATTTTAGATGGTC
1638 TGTATCCTTCCATGTGCTAGACAT
131 TGTATCCTTCCATGTGCTAGACAT
1662 TTTTATCTGTGCATGTTCTTAGGAATGTTTCCACTTGTTTATCATACGGACTTGACTGTTTATAG
1 TTTTATCTGTGCATGTTCTTAGGAATGTTTCCACTTGTTTATCATACGGACTTGACTGTTTATAG
*
1727 TGATGATTTAGATCTAATTTTCTTATCGATCACATATTTCTCGTTTATTTAGATTTTAGATGGTC
66 TGATGATTTAGATCTAATTTTCTTATCAATCACATATTTCTCGTTTATTTAGATTTTAGATGGTC
*
1792 TGTATCCTTCCTTGTGCTAGACAT
131 TGTATCCTTCCATGTGCTAGACAT
1816 TTTT
1 TTTT
1820 TATTACCTAA
Statistics
Matches: 156, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 156 1.00
ACGTcount: A:0.22, C:0.15, G:0.16, T:0.47
Consensus pattern (154 bp):
TTTTATCTGTGCATGTTCTTAGGAATGTTTCCACTTGTTTATCATACGGACTTGACTGTTTATAG
TGATGATTTAGATCTAATTTTCTTATCAATCACATATTTCTCGTTTATTTAGATTTTAGATGGTC
TGTATCCTTCCATGTGCTAGACAT
Done.