Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02500.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2371
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.22


Found at i:1071 original size:36 final size:36

Alignment explanation


    Indices: 1024--1107  Score: 91
    Period size: 36  Copynumber: 2.3  Consensus size: 36

       1014 GGGGACAGTG

                  *                               
       1024 AGGAAGAAGGAGAGCAA-GAGGAAGGCGCAAA-GAGAA
          1 AGGAAGGAGGAGAG-AATGAGGAAGGCGCAAATG-GAA

                                 ***   *        
       1060 AGGAAGGAGGAGAGAATGAGGGTTGCGGAAATGGAA
          1 AGGAAGGAGGAGAGAATGAGGAAGGCGCAAATGGAA

                        
       1096 AGGAAGGAGGAG
          1 AGGAAGGAGGAG

       1108 TTGAAGCATT


Statistics
Matches: 41,  Mismatches: 5, Indels: 4
        0.82            0.10        0.08

Matches are distributed among these distances:
  35    2  0.05
  36   38  0.93
  37    1  0.02

ACGTcount: A:0.44, C:0.05, G:0.46, T:0.05


Consensus pattern (36 bp):   
AGGAAGGAGGAGAGAATGAGGAAGGCGCAAATGGAA

Found at i:1508 original size:6 final size:6

Alignment explanation


    Indices: 1497--1553  Score: 78
    Period size: 6  Copynumber: 9.5  Consensus size: 6

       1487 AGGATGATGT

                                          *               *      * 
       1497 TGAAGA TGAAGA TGAAGA TGAAGA TGGAGA TGAAGA TGAAAA TGAAAA
          1 TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA

            *         
       1545 AGAAGA TGA
          1 TGAAGA TGA

       1554 TGGTGATGGT


Statistics
Matches: 45,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   45  1.00

ACGTcount: A:0.53, C:0.00, G:0.32, T:0.16


Consensus pattern (6 bp):   
TGAAGA

Found at i:1633 original size:24 final size:24

Alignment explanation


    Indices: 1606--1653  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1596 TGATGATAAT

                                     
       1606 GAAGAAGATGAC-GAGGAAAGTAAG
          1 GAAGAAGA-GACTGAGGAAAGTAAG

                 *            *     
       1630 GAAGAGGAGACTGAGGAAGGTAAG
          1 GAAGAAGAGACTGAGGAAAGTAAG

       1654 CGGAAGAGGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  23    3  0.14
  24   18  0.86

ACGTcount: A:0.46, C:0.04, G:0.42, T:0.08


Consensus pattern (24 bp):   
GAAGAAGAGACTGAGGAAAGTAAG
Done.