Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02503.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4103
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:1846 original size:32 final size:32

Alignment explanation


    Indices: 1810--1874  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1800 TTTGCATCTC

                                            
       1810 TCCTGTAACATCCAATGGTTATTTTTAATGAA
          1 TCCTGTAACATCCAATGGTTATTTTTAATGAA

                                            
       1842 TCCTGTAACATCCAATGGTTATTTTTAATGAA
          1 TCCTGTAACATCCAATGGTTATTTTTAATGAA

             
       1874 T
          1 T

       1875 TCTGAGCTTA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42


Consensus pattern (32 bp):   
TCCTGTAACATCCAATGGTTATTTTTAATGAA

Found at i:3414 original size:39 final size:39

Alignment explanation


    Indices: 3360--3437  Score: 147
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       3350 TGTGGCAAAA

                   *                               
       3360 GGCTATTTTTTCAACTTCAAACATGCAATTATGAATAGT
          1 GGCTATTGTTTCAACTTCAAACATGCAATTATGAATAGT

                                                   
       3399 GGCTATTGTTTCAACTTCAAACATGCAATTATGAATAGT
          1 GGCTATTGTTTCAACTTCAAACATGCAATTATGAATAGT

       3438 TTATGGATCC


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.33, C:0.15, G:0.14, T:0.37


Consensus pattern (39 bp):   
GGCTATTGTTTCAACTTCAAACATGCAATTATGAATAGT
Done.