Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02507.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2826
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37


Found at i:539 original size:16 final size:16

Alignment explanation


    Indices: 518--550  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        508 CAAATATGTT

                            
        518 TGGCAACTTTAGTGTA
          1 TGGCAACTTTAGTGTA

                  *         
        534 TGGCAATTTTAGTGTA
          1 TGGCAACTTTAGTGTA

             
        550 T
          1 T

        551 AATGATGGAC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.24, C:0.09, G:0.24, T:0.42


Consensus pattern (16 bp):   
TGGCAACTTTAGTGTA

Found at i:830 original size:36 final size:36

Alignment explanation


    Indices: 763--831  Score: 84
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        753 CTTGTAAAGT

                          *     *  *  *         
        763 TTTGAGATAAAAAGTGAAATGCTTGATCTTGCTCAA
          1 TTTGAGATAAAAAGCGAAATACTCGAGCTTGCTCAA

                *             *              
        799 TTTGGGATAAAAAGCGAACTACTCGAGCTTGCT
          1 TTTGAGATAAAAAGCGAAATACTCGAGCTTGCT

        832 TGATTAGGCT


Statistics
Matches: 27,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  36   27  1.00

ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30


Consensus pattern (36 bp):   
TTTGAGATAAAAAGCGAAATACTCGAGCTTGCTCAA
Done.