Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g02510.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5020
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Found at i:3097 original size:54 final size:54
Alignment explanation
Indices: 3010--3114 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 54
3000 ACAGTCTGTT
* * *
3010 GGTATTACTGTTCACACCAAAACTCAGCTGGGTGAATACAGTGATCTGAATGAG
1 GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAATGAG
**
3064 GGTACTACTGTTCACACTGAAACTCAGCAGGGTGAACACAGTGATCTGAAT
1 GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAAT
3115 TCTCAACAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (54 bp):
GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAATGAG
Found at i:4362 original size:8 final size:9
Alignment explanation
Indices: 4332--4373 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
4322 TGGTTTTTTT
4332 TTTTTTTA-
1 TTTTTTTAC
4340 TATTTTTATA-
1 T-TTTTT-TAC
4350 TTTTTTTAC
1 TTTTTTTAC
4359 TTTTTTTAC
1 TTTTTTTAC
4368 TTTTTT
1 TTTTTT
4374 CTCATTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 3 0.10
9 25 0.81
10 3 0.10
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTTTAC
Done.