Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02510.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4249
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31


Found at i:3097 original size:54 final size:54

Alignment explanation


    Indices: 3010--3114  Score: 165
    Period size: 54  Copynumber: 1.9  Consensus size: 54

       3000 ACAGTCTGTT

                *                       *       *                 
       3010 GGTATTACTGTTCACACCAAAACTCAGCTGGGTGAATACAGTGATCTGAATGAG
          1 GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAATGAG

                             **                                
       3064 GGTACTACTGTTCACACTGAAACTCAGCAGGGTGAACACAGTGATCTGAAT
          1 GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAAT

       3115 TCTCAACAGG


Statistics
Matches: 46,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  54   46  1.00

ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25


Consensus pattern (54 bp):   
GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAATGAG
Done.