Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02526.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2937
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:481 original size:20 final size:20

Alignment explanation


    Indices: 456--495  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        446 ATATAATGAT

                                 
        456 AAAA-TTATATTTTATCCCTC
          1 AAAATTTATA-TTTATCCCTC

                                
        476 AAAATTTATGATTTATCCCT
          1 AAAATTTAT-ATTTATCCCT

        496 TTAAAATAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    4  0.22
  21   13  0.72
  22    1  0.06

ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45


Consensus pattern (20 bp):   
AAAATTTATATTTATCCCTC

Found at i:594 original size:8 final size:8

Alignment explanation


    Indices: 581--611  Score: 53
    Period size: 8  Copynumber: 3.9  Consensus size: 8

        571 CTCAACTTTA

                    
        581 TATATATG
          1 TATATATG

                    
        589 TATATATG
          1 TATATATG

                   *
        597 TATATATA
          1 TATATATG

                   
        605 TATATAT
          1 TATATAT

        612 TGAAAATAGA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   8   22  1.00

ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52


Consensus pattern (8 bp):   
TATATATG
Done.