Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02528.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2552
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:44 original size:17 final size:17

Alignment explanation


    Indices: 22--58  Score: 58
    Period size: 17  Copynumber: 2.2  Consensus size: 17

         12 AGATTTTTTC

                              
         22 TTTTTTTTTC-CTGGGAT
          1 TTTTTTTTTCTCTGGG-T

                             
         39 TTTTTTTTTCTCTGGGT
          1 TTTTTTTTTCTCTGGGT

               
         56 TTT
          1 TTT

         59 CATTCTTTTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  17   14  0.74
  18    5  0.26

ACGTcount: A:0.03, C:0.11, G:0.16, T:0.70


Consensus pattern (17 bp):   
TTTTTTTTTCTCTGGGT

Done.