Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02533.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4451
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31


Found at i:1738 original size:23 final size:23

Alignment explanation


    Indices: 1687--1738  Score: 63
    Period size: 23  Copynumber: 2.3  Consensus size: 23

       1677 CAATGGAGAG

                                   
       1687 AAATCTCAATATTCAATATCACA
          1 AAATCTCAATATTCAATATCACA

             *                       
       1710 ATATCTCGAATATT-AATCATC-CA
          1 AAATCTC-AATATTCAAT-ATCACA

                  
       1733 AAATCT
          1 AAATCT

       1739 AGTTAAAACT


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  23   16  0.64
  24    9  0.36

ACGTcount: A:0.44, C:0.21, G:0.02, T:0.33


Consensus pattern (23 bp):   
AAATCTCAATATTCAATATCACA
Done.