Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02534.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 932

Length: 1554
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26


Found at i:1458 original size:25 final size:23

Alignment explanation


    Indices: 1410--1458  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 23

       1400 TATAAGAATC

                                   
       1410 ATTAATAATTAGCTTAATTTATT
          1 ATTAATAATTAGCTTAATTTATT

                                      
       1433 ATTATATAATATAG-TTAAATTTATT
          1 ATTA-ATAAT-TAGCTT-AATTTATT

             
       1458 A
          1 A

       1459 CGTGATATGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  23    4  0.17
  24    7  0.30
  25   12  0.52

ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51


Consensus pattern (23 bp):   
ATTAATAATTAGCTTAATTTATT
Done.