Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02540.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1681
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:1553 original size:42 final size:43

Alignment explanation


    Indices: 1494--1586  Score: 122
    Period size: 42  Copynumber: 2.2  Consensus size: 43

       1484 GCTGGTTAAC

                       *                      *          
       1494 AAGTGTTTGTGGAAATGTCA-C-TGAGGTTAATATA-ATCAATAA
          1 AAGTGTTTGTGAAAATGTCACCGTGA-GTT-ATAAAGATCAATAA

                                                       
       1536 AAGTGTTTGTGAAAATGTCACCGTGAGTTATAAAGATCAATAA
          1 AAGTGTTTGTGAAAATGTCACCGTGAGTTATAAAGATCAATAA

                     
       1579 AA-TGTTTG
          1 AAGTGTTTG

       1587 CTACTGCTTT


Statistics
Matches: 46,  Mismatches: 2, Indels: 6
        0.85            0.04        0.11

Matches are distributed among these distances:
  42   29  0.63
  43   14  0.30
  44    3  0.07

ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33


Consensus pattern (43 bp):   
AAGTGTTTGTGAAAATGTCACCGTGAGTTATAAAGATCAATAA
Done.