Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02547.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 951

Length: 1586
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38


Found at i:786 original size:30 final size:30

Alignment explanation


    Indices: 752--813  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        742 AAAAGTTATT

                                          
        752 TTTTTATCTCCATCTTCTAAATAAAATTTC
          1 TTTTTATCTCCATCTTCTAAATAAAATTTC

                                          
        782 TTTTTATCTCCATCTTCTAAATAAAATTTC
          1 TTTTTATCTCCATCTTCTAAATAAAATTTC

              
        812 TT
          1 TT

        814 ACTCCACTCT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.29, C:0.19, G:0.00, T:0.52


Consensus pattern (30 bp):   
TTTTTATCTCCATCTTCTAAATAAAATTTC

Done.