Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02555.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 938

Length: 1564
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:235 original size:21 final size:20

Alignment explanation


    Indices: 211--250  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        201 ATAAAAGAAT

                      *          
        211 AATATATTAATATTTTATTAA
          1 AATATATTAAGA-TTTATTAA

                 *             
        232 AATATTTTAAGATTTATTA
          1 AATATATTAAGATTTATTA

        251 CATTTTTATC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20    7  0.41
  21   10  0.59

ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53


Consensus pattern (20 bp):   
AATATATTAAGATTTATTAA
Done.