Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02560.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 834

Length: 1391
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35


Found at i:1244 original size:21 final size:21

Alignment explanation


    Indices: 1220--1259  Score: 80
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1210 GAAGCTTAAT

                                 
       1220 AGGTCCTCTGAACAGGTCTCG
          1 AGGTCCTCTGAACAGGTCTCG

                               
       1241 AGGTCCTCTGAACAGGTCT
          1 AGGTCCTCTGAACAGGTCT

       1260 TGAATTGGGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.20, C:0.28, G:0.28, T:0.25


Consensus pattern (21 bp):   
AGGTCCTCTGAACAGGTCTCG
Done.