Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02563.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1071
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28


Found at i:1054 original size:22 final size:21

Alignment explanation


    Indices: 1023--1069  Score: 53
    Period size: 20  Copynumber: 2.2  Consensus size: 21

       1013 ATTTGTAGCA

                                    
       1023 TTTTAGATGTATATATGCATT-TT
          1 TTTTAGATGT-T-TATG-ATTGTT

                                 
       1046 TTTTA-ATGTTTATGATTGTT
          1 TTTTAGATGTTTATGATTGTT

                
       1066 TTTT
          1 TTTT

       1070 TT


Statistics
Matches: 23,  Mismatches: 0, Indels: 5
        0.82            0.00        0.18

Matches are distributed among these distances:
  19    3  0.13
  20   10  0.43
  21    1  0.04
  22    4  0.17
  23    5  0.22

ACGTcount: A:0.21, C:0.02, G:0.13, T:0.64


Consensus pattern (21 bp):   
TTTTAGATGTTTATGATTGTT
Done.