Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02571.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1257
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29


Found at i:493 original size:16 final size:16

Alignment explanation


    Indices: 460--492  Score: 57
    Period size: 17  Copynumber: 2.0  Consensus size: 16

        450 ACTTTAAAGA

                            
        460 GATCGAAGAACATGGG
          1 GATCGAAGAACATGGG

                             
        476 GATCGGAAGAACATGGG
          1 GATC-GAAGAACATGGG

        493 AATGAGTATC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    4  0.25
  17   12  0.75

ACGTcount: A:0.36, C:0.12, G:0.39, T:0.12


Consensus pattern (16 bp):   
GATCGAAGAACATGGG
Done.