Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02573.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3262
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1686 original size:37 final size:38

Alignment explanation


    Indices: 1645--1720  Score: 100
    Period size: 39  Copynumber: 2.0  Consensus size: 38

       1635 TGATAACTCA

                     *                            
       1645 AAGCAAA-AGAAATCAGAAGATTCATCTGATATCTTAG
          1 AAGCAAACAAAAATCAGAAGATTCATCTGATATCTTAG

                           *         * *           
       1682 AAGCAAAGCAAAAATTAGAAGATTCTTGTGATATCTTAG
          1 AAGCAAA-CAAAAATCAGAAGATTCATCTGATATCTTAG

       1721 GGCCACATAG


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  37    7  0.21
  39   26  0.79

ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26


Consensus pattern (38 bp):   
AAGCAAACAAAAATCAGAAGATTCATCTGATATCTTAG
Done.