Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02576.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3236
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:562 original size:18 final size:18

Alignment explanation


    Indices: 539--574  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        529 AAAGCCTTCG

                    *         
        539 AAGTATGGTCACCGTATT
          1 AAGTATGGCCACCGTATT

                        *     
        557 AAGTATGGCCACTGTATT
          1 AAGTATGGCCACCGTATT

        575 GGGGTTTTTT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Consensus pattern (18 bp):   
AAGTATGGCCACCGTATT
Done.