Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02577.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6124
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:5830 original size:18 final size:18

Alignment explanation


    Indices: 5799--5834  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       5789 AAAAAACCCC

                     *        
       5799 AATACAGTGGCCATACTT
          1 AATACAGTGACCATACTT

                 *            
       5817 AATACGGTGACCATACTT
          1 AATACAGTGACCATACTT

       5835 CGAAGGCTTT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28


Consensus pattern (18 bp):   
AATACAGTGACCATACTT
Done.