Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02587.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 938

Length: 1564
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.37


Found at i:566 original size:7 final size:7

Alignment explanation


    Indices: 550--583  Score: 61
    Period size: 7  Copynumber: 5.0  Consensus size: 7

        540 TTGAACCTAA

                   
        550 TTTTTA-
          1 TTTTTAT

                   
        556 TTTTTAT
          1 TTTTTAT

                   
        563 TTTTTAT
          1 TTTTTAT

                   
        570 TTTTTAT
          1 TTTTTAT

                   
        577 TTTTTAT
          1 TTTTTAT

        584 GAACTTTTTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6    6  0.22
   7   21  0.78

ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85


Consensus pattern (7 bp):   
TTTTTAT

Done.