Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02593.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 457

Length: 762
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30


Found at i:49 original size:19 final size:20

Alignment explanation


    Indices: 12--51  Score: 64
    Period size: 19  Copynumber: 2.0  Consensus size: 20

          2 CCCTCTCTAT

                                
         12 TTTCTTGGATTCTGATTCAC
          1 TTTCTTGGATTCTGATTCAC

                          *     
         32 TTTCTTGGA-TCTGTTTCAC
          1 TTTCTTGGATTCTGATTCAC

             
         51 T
          1 T

         52 CTCTCAGTCT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19   10  0.53
  20    9  0.47

ACGTcount: A:0.12, C:0.20, G:0.15, T:0.53


Consensus pattern (20 bp):   
TTTCTTGGATTCTGATTCAC
Done.