Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02020.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2197
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24


Found at i:2105 original size:15 final size:15

Alignment explanation


    Indices: 2042--2105  Score: 53
    Period size: 16  Copynumber: 4.3  Consensus size: 15

       2032 ATAAACAAGC

                  *        
       2042 CTTTTTAGTTCTGTT
          1 CTTTTTTGTTCTGTT

                    *         
       2057 CTATTTTTTTTCTTTGTT
          1 CT-TTTTTGTTC--TGTT

                        *  
       2075 C-TTTTT-TTC-ATT
          1 CTTTTTTGTTCTGTT

                           
       2087 CTTTTTTGTTCTGTT
          1 CTTTTTTGTTCTGTT

                
       2102 CTTT
          1 CTTT

       2106 GAAAAAATAT


Statistics
Matches: 39,  Mismatches: 4, Indels: 12
        0.71            0.07        0.22

Matches are distributed among these distances:
  12    3  0.08
  13    5  0.13
  14    3  0.08
  15   11  0.28
  16   12  0.31
  18    5  0.13

ACGTcount: A:0.05, C:0.14, G:0.08, T:0.73


Consensus pattern (15 bp):   
CTTTTTTGTTCTGTT
Done.