Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02602.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 731

Length: 1219
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32


Found at i:768 original size:16 final size:17

Alignment explanation


    Indices: 730--769  Score: 50
    Period size: 15  Copynumber: 2.5  Consensus size: 17

        720 CTCTCTAATC

                             
        730 TTAATCATAAAAGTAAA
          1 TTAATCATAAAAGTAAA

                              
        747 TT-ATCA-AAAAG-AATA
          1 TTAATCATAAAAGTAA-A

                    
        762 TTAATCAT
          1 TTAATCAT

        770 CTTTTGTTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 6
        0.77            0.00        0.23

Matches are distributed among these distances:
  14    2  0.10
  15    8  0.40
  16    8  0.40
  17    2  0.10

ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33


Consensus pattern (17 bp):   
TTAATCATAAAAGTAAA
Done.