Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02021.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4202
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26


Found at i:1629 original size:9 final size:9

Alignment explanation


    Indices: 1607--1667  Score: 63
    Period size: 9  Copynumber: 6.8  Consensus size: 9

       1597 CAAGAGTACA

                     
       1607 GATGAAGA-
          1 GATGAAGAT

                    * 
       1615 GAATGAAGGT
          1 G-ATGAAGAT

                     
       1625 GATGAAGAT
          1 GATGAAGAT

                 *   
       1634 GATGATGAT
          1 GATGAAGAT

                 *   
       1643 GATGATGAT
          1 GATGAAGAT

                      
       1652 GATGACA-AT
          1 GATGA-AGAT

                   
       1661 GATGAAG
          1 GATGAAG

       1668 GTGAAGATGA


Statistics
Matches: 45,  Mismatches: 4, Indels: 7
        0.80            0.07        0.12

Matches are distributed among these distances:
   8    2  0.04
   9   42  0.93
  10    1  0.02

ACGTcount: A:0.41, C:0.02, G:0.34, T:0.23


Consensus pattern (9 bp):   
GATGAAGAT

Found at i:1665 original size:3 final size:3

Alignment explanation


    Indices: 1624--1656  Score: 57
    Period size: 3  Copynumber: 11.0  Consensus size: 3

       1614 AGAATGAAGG

                    *                                  
       1624 TGA TGA AGA TGA TGA TGA TGA TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

       1657 CAATGATGAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.36, C:0.00, G:0.33, T:0.30


Consensus pattern (3 bp):   
TGA
Done.