Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g02609.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1457
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25


Found at i:1110 original size:12 final size:14

Alignment explanation


    Indices: 1093--1129  Score: 51
    Period size: 12  Copynumber: 2.7  Consensus size: 14

       1083 AGAGATGGAC

                          
       1093 GCTGCTGCAAA-A-
          1 GCTGCTGCAAAGAG

                           
       1105 GCTGCTGCACAAGAG
          1 GCTGCTGCA-AAGAG

                      
       1120 GCTGCTGCAA
          1 GCTGCTGCAA

       1130 GGAGTGCGAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  12    9  0.41
  13    2  0.09
  14    2  0.09
  15    9  0.41

ACGTcount: A:0.27, C:0.27, G:0.30, T:0.16


Consensus pattern (14 bp):   
GCTGCTGCAAAGAG
Done.