Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g02617.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1694
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.27
Found at i:289 original size:72 final size:72
Alignment explanation
Indices: 200--543 Score: 530
Period size: 72 Copynumber: 4.8 Consensus size: 72
190 GGTCACTGTC
* * * *
200 CCACCAG-TGACAGTCCCTCCAATAGTAAAACCA-CCAGTTACAGTCCCACCAGTGACTGTTCCT
1 CCACCAGTTGA-ACTCCCTCCGATTGCAAAACCACCCA-TTACAGTCCCACCAGTGACTGTTCCT
*
263 CCTGTGAAG
64 CCTGTAAAG
272 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
337 TGTAAAG
66 TGTAAAG
*
344 CCACCTGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
*
409 TGTGAAG
66 TGTAAAG
416 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
481 TGTAAAG
66 TGTAAAG
* * * * * * *
488 CCACCTGTTGATCTCCCTCCAATTGCTAAGCCACCCATTACGGTTCCACCAGTGAC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
544 CATCCCTCCA
Statistics
Matches: 254, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
72 248 0.98
73 6 0.02
ACGTcount: A:0.25, C:0.37, G:0.15, T:0.23
Consensus pattern (72 bp):
CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
TGTAAAG
Found at i:400 original size:144 final size:145
Alignment explanation
Indices: 213--774 Score: 770
Period size: 144 Copynumber: 3.8 Consensus size: 145
203 CCAGTGACAG
* *
213 TCCCTCCAATAGTAAAACCA-CCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
1 TCCCTCCAATTGCAAAACCACCCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
*
277 AGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
66 AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
342 AGCCACCTGTTGAAC
131 AGCCACCTGTTGAAC
*
357 TCCCTCCGATTGCAAAACCACCCA-TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
1 TCCCTCCAATTGCAAAACCACCCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
*
421 AGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
66 AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
*
486 AGCCACCTGTTGATC
131 AGCCACCTGTTGAAC
* * *
501 TCCCTCCAATTGCTAAGCCACCCATTACGGTTCCACCAGTGACCATCCCTCCAGTGACTGTTCCT
1 TCCCTCCAATTGCAAAACCACCC---A--GTT--A-CA--G----TCCCACCAGTGACTGTTCCT
* * * * *
566 CCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCCATTACAGTTCCACCAGTGAC
52 CCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
* * *
631 TGTTCCTCCTGTGAAGCCACCAGTTGAGC
117 TGTTCCTCCTGTAAAGCCACCTGTTGAAC
*
660 TCCCTCCAATTGCAAAGCCACCCA-TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
1 TCCCTCCAATTGCAAAACCACCCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
* * * * *
724 AGTTGACCTCCCTCCAATTGCAAAACCGCCCATCACAGTTCCTCCAGTGAC
66 AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
775 CCTCCCAGTC
Statistics
Matches: 376, Mismatches: 26, Indels: 32
0.87 0.06 0.07
Matches are distributed among these distances:
144 233 0.62
145 3 0.01
147 1 0.00
148 1 0.00
150 4 0.01
151 1 0.00
152 1 0.00
153 4 0.01
155 1 0.00
156 1 0.00
159 126 0.34
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.24
Consensus pattern (145 bp):
TCCCTCCAATTGCAAAACCACCCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
AGCCACCTGTTGAAC
Found at i:609 original size:72 final size:72
Alignment explanation
Indices: 546--774 Score: 359
Period size: 72 Copynumber: 3.2 Consensus size: 72
536 CCAGTGACCA
* * * *
546 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
611 ATTACAG
66 ATTACAG
* *
618 TTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
683 ATTACAG
66 ATTACAG
* *
690 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCGCCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
*
755 ATCACAG
66 ATTACAG
* *
762 TTCCTCCAGTGAC
1 TCCCACCAGTGAC
775 CCTCCCAGTC
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 145 1.00
ACGTcount: A:0.22, C:0.38, G:0.15, T:0.24
Consensus pattern (72 bp):
TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
ATTACAG
Found at i:633 original size:231 final size:235
Alignment explanation
Indices: 315--954 Score: 874
Period size: 231 Copynumber: 2.7 Consensus size: 235
305 CCCATTACAG
* *
315 TCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCGATTGCAAAACCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
*
380 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
* *
445 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAA
131 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
* * * *
510 TTGCTAAGCCACCCATTACGGTTCCACCAGTG-A-CC-A-
196 TTGCAAAACCACCCATCACAGTTCCACCAGTGCACCCTAC
* * *
546 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
611 ATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
* *
676 GCCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAA
131 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
* *
741 TTGCAAAACCGCCCATCACAGTTCCTCCAGTGACCCTCCCAGTCCCTCCAGTTAC
196 TTGCAAAACCACCCATCACAGTTCCACCAGTG-------CA----C-CC---TAC
* *
796 TGTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
1 --TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCAC
* *
861 CCATCACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCA
64 CCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCA
* * *
926 AAACCACCAATCACAGTCCCTCCAGTGAC
129 AAACCACCCATTACAGTCCCACCAGTGAC
955 CGTCCCAGTC
Statistics
Matches: 359, Mismatches: 29, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
231 209 0.58
239 1 0.00
245 2 0.01
249 1 0.00
252 146 0.41
ACGTcount: A:0.23, C:0.39, G:0.15, T:0.24
Consensus pattern (235 bp):
TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
TTGCAAAACCACCCATCACAGTTCCACCAGTGCACCCTAC
Found at i:639 original size:87 final size:87
Alignment explanation
Indices: 459--630 Score: 308
Period size: 87 Copynumber: 2.0 Consensus size: 87
449 CCCATTACAG
* *
459 TCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCTAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
*
524 ATTACGGTTCCACCAGTGACCA
66 ATTACAGTTCCACCAGTGACCA
*
546 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
611 ATTACAGTTCCACCAGTGAC
66 ATTACAGTTCCACCAGTGAC
631 TGTTCCTCCT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.22, C:0.38, G:0.15, T:0.26
Consensus pattern (87 bp):
TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
ATTACAGTTCCACCAGTGACCA
Found at i:711 original size:159 final size:159
Alignment explanation
Indices: 387--702 Score: 515
Period size: 159 Copynumber: 2.0 Consensus size: 159
377 CCCATTACAG
* *
387 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAAACCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
* * *
452 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCTAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
* *
517 GCCACCCATTACGGTTCCACCAGTGACCA
131 GCCACCCATTACAGTCCCACCAGTGACCA
* * * *
546 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
611 ATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
676 GCCACCCATTACAGTCCCACCAGTGAC
131 GCCACCCATTACAGTCCCACCAGTGAC
703 TGTTCCTCCT
Statistics
Matches: 144, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
159 144 1.00
ACGTcount: A:0.23, C:0.38, G:0.15, T:0.24
Consensus pattern (159 bp):
TCCCTCCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
GCCACCCATTACAGTCCCACCAGTGACCA
Found at i:802 original size:15 final size:15
Alignment explanation
Indices: 782--819 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
772 GACCCTCCCA
*
782 GTCCCTCCAGTTACT
1 GTCCCTCCAGTGACT
797 GTCCCTCCAGTGACT
1 GTCCCTCCAGTGACT
*
812 GTTCCTCC
1 GTCCCTCC
820 TGTAAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.42, G:0.16, T:0.32
Consensus pattern (15 bp):
GTCCCTCCAGTGACT
Found at i:816 original size:108 final size:108
Alignment explanation
Indices: 684--882 Score: 344
Period size: 108 Copynumber: 1.8 Consensus size: 108
674 AAGCCACCCA
*
684 TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
1 TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
* * *
749 CCGCCCATCACAGTTCCTCCAGTGACCCTCCCAGTCCCTCCAG
66 CCACCCATCACAGTCCCACCAGTGACCCTCCCAGTCCCTCCAG
* *
792 TTACTGTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
1 TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
857 CCACCCATCACAGTCCCACCAGTGAC
66 CCACCCATCACAGTCCCACCAGTGAC
883 TGTTCCTCCT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 85 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23
Consensus pattern (108 bp):
TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
CCACCCATCACAGTCCCACCAGTGACCCTCCCAGTCCCTCCAG
Found at i:830 original size:180 final size:180
Alignment explanation
Indices: 623--1062 Score: 781
Period size: 180 Copynumber: 2.4 Consensus size: 180
613 TACAGTTCCA
* * * *
623 CCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCCATTAC
1 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
*
688 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCGC
66 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
* * *
753 CCATCACAGTTCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCT
131 CAATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTAACTGTCCCT
803 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
1 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
868 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
66 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
*
933 CAATCACAGTCCCTCCAGTGACCGTCCCAGTCCCTCCAGTAACTGTCCCT
131 CAATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTAACTGTCCCT
* *
983 CCAGTGACTGTTCCTCCCGTAAAACCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
1 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
1048 AGTCCCACCAGTGAC
66 AGTCCCACCAGTGAC
1063 CGTCCCAGTC
Statistics
Matches: 249, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
180 249 1.00
ACGTcount: A:0.23, C:0.40, G:0.14, T:0.22
Consensus pattern (180 bp):
CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
CAATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTAACTGTCCCT
Found at i:879 original size:72 final size:72
Alignment explanation
Indices: 797--954 Score: 289
Period size: 72 Copynumber: 2.2 Consensus size: 72
787 TCCAGTTACT
797 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
*
862 CATCACA
66 AATCACA
* *
869 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
934 AATCACA
66 AATCACA
941 GTCCCTCCAGTGAC
1 GTCCCTCCAGTGAC
955 CGTCCCAGTC
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 82 1.00
ACGTcount: A:0.25, C:0.40, G:0.14, T:0.22
Consensus pattern (72 bp):
GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
AATCACA
Found at i:965 original size:21 final size:21
Alignment explanation
Indices: 939--981 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
929 CCACCAATCA
*
939 CAGTCCCTCCAGTGACCGTCC
1 CAGTCCCTCCAGTAACCGTCC
*
960 CAGTCCCTCCAGTAACTGTCC
1 CAGTCCCTCCAGTAACCGTCC
981 C
1 C
982 TCCAGTGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.47, G:0.16, T:0.21
Consensus pattern (21 bp):
CAGTCCCTCCAGTAACCGTCC
Found at i:982 original size:15 final size:15
Alignment explanation
Indices: 962--1004 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
952 GACCGTCCCA
962 GTCCCTCCAGTAACT
1 GTCCCTCCAGTAACT
*
977 GTCCCTCCAGTGACT
1 GTCCCTCCAGTAACT
* *
992 GTTCCTCCCGTAA
1 GTCCCTCCAGTAA
1005 AACCACCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.16, C:0.40, G:0.16, T:0.28
Consensus pattern (15 bp):
GTCCCTCCAGTAACT
Found at i:988 original size:108 final size:108
Alignment explanation
Indices: 869--1097 Score: 368
Period size: 108 Copynumber: 2.1 Consensus size: 108
859 ACCCATCACA
* * * *
869 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCCGTAAAACCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
* *
934 AATCACAGTCCCTCCAGTGACCGTCCCAGTCCCTCCAGTAACT
66 AATCACAGTCCCACCAGTGACCGTCCCAGTCCCACCAGTAACT
977 GTCCCTCCAGTGACTGTTCCTCCCGTAAAACCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCCGTAAAACCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
* *
1042 CATCACAGTCCCACCAGTGACCGTCCCAGTCCCACCAGTGACT
66 AATCACAGTCCCACCAGTGACCGTCCCAGTCCCACCAGTAACT
* *
1085 GTTCCTCCTGTGA
1 GTCCCTCCAGTGA
1098 AACCACCTAT
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 111 1.00
ACGTcount: A:0.23, C:0.41, G:0.15, T:0.21
Consensus pattern (108 bp):
GTCCCTCCAGTGACTGTTCCTCCCGTAAAACCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
AATCACAGTCCCACCAGTGACCGTCCCAGTCCCACCAGTAACT
Done.